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sca toolbox  (MathWorks Inc)


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    MathWorks Inc sca toolbox
    Sca Toolbox, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/sca toolbox/product/MathWorks Inc
    Average 90 stars, based on 1 article reviews
    sca toolbox - by Bioz Stars, 2026-05
    90/100 stars

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    a) Crystal structure of PDZ3 bound to a peptide ligand (Doyle et al., 1996) (PDB ID 1be9), including the annotation of secondary structure followed in this article. b) Calculated <t>SCA</t> sector for PDZ domains (Suel, Lockless, Wall <t>&</t> <t>Ranganathan,</t> 2003); and c) Observed mutationally sensitive residues (MSR) of PDZ3 (McLaughlin et al., 2012).
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    a) Crystal structure of PDZ3 bound to a peptide ligand (Doyle et al., 1996) (PDB ID 1be9), including the annotation of secondary structure followed in this article. b) Calculated <t>SCA</t> sector for PDZ domains (Suel, Lockless, Wall <t>&</t> <t>Ranganathan,</t> 2003); and c) Observed mutationally sensitive residues (MSR) of PDZ3 (McLaughlin et al., 2012).
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    a) Crystal structure of PDZ3 bound to a peptide ligand (Doyle et al., 1996) (PDB ID 1be9), including the annotation of secondary structure followed in this article. b) Calculated SCA sector for PDZ domains (Suel, Lockless, Wall & Ranganathan, 2003); and c) Observed mutationally sensitive residues (MSR) of PDZ3 (McLaughlin et al., 2012).

    Journal: Journal of biomolecular structure & dynamics

    Article Title: Spectral analysis of Molecular Dynamics simulations on PDZ: MD Sectors

    doi: 10.1080/07391102.2019.1588169

    Figure Lengend Snippet: a) Crystal structure of PDZ3 bound to a peptide ligand (Doyle et al., 1996) (PDB ID 1be9), including the annotation of secondary structure followed in this article. b) Calculated SCA sector for PDZ domains (Suel, Lockless, Wall & Ranganathan, 2003); and c) Observed mutationally sensitive residues (MSR) of PDZ3 (McLaughlin et al., 2012).

    Article Snippet: Spectral analysis was applied using the protocol of Ranganathan et. al as implemented in the MATLAB toolbox for SCA analysis, with the covariance of motional or energetic fluctuations in place of the evolutionary covariance matrix.

    Techniques: